Eva's birthday has just passed, and she hasn't heard from her father. Despising the Boarding School she attends, she escapes using her Rocket Bike that she just completed. Taking on the alias "Molly," Eva sneaks with the Earth team to Alwas for the Great Race because the winner of the race gets any one wish granted. Little does the Earth Team know what danger awaits them...

Tired of Yuuko's antics for causing more ghost stories to be spread amongst the students, Kirie challenges her to a series of games which if Yuuko loses, she must behave.

Friends will only let you down—that is the sad truth Mei Tachibana lives with, ever since she was wrongfully blamed for the death of a class pet by her so-called friends in grade school. Since then, she stays away from people in order to avoid ever being hurt again. However, Mei's life begins to change drastically when a misunderstanding in high school causes her to encounter popular student Yamato Kurosawa. Yamato finds her intriguing and insists on being her friend, even though Mei wants nothing to do with him. But when a dangerous situation ends with Yamato kissing Mei to save her from the unwanted attention of a stalker, Mei begins to develop feelings for him. On the heels of her discovery that their feelings are mutual, they start dating and she gains not only a boyfriend, but friends as well. Mei, however, finds it very hard to adapt to this new lifestyle, especially in expressing her true feelings towards Yamato. Throughout misunderstandings of their new relationship, each other, and the attentions of other girls, Mei and Yamato slowly grow closer and learn the true meaning of those three little words: "I love you."

In the distant future, a majority of humans have left the Earth, and the Galactic Alliance of Humanity is founded to guide exploration and ensure the prosperity of mankind. However, a significant threat arises in the form of strange creatures called Hideauze, resulting in an interstellar war to prevent humanity's extinction. Armed with Chamber, an autonomous robot, 16-year-old lieutenant Ledo of the Galactic Alliance joins the battle against the monsters. In an unfortunate turn of events, Ledo loses control during the battle and is cast out to the far reaches of space, crash-landing on a waterlogged Earth. On the blue planet, Gargantia—a large fleet of scavenger ships—comes across Chamber and retrieves it from the ocean, thinking they have salvaged something of value. Mistaking their actions for hostility, Ledo sneaks aboard and takes a young messenger girl named Amy hostage, only to realize that the residents of Gargantia are not as dangerous as he had believed. Faced with uncertainty, and unable to communicate with his comrades in space, Ledo attempts to get his bearings and acclimate to a new lifestyle. But his peaceful days are about to be short-lived, as there is more to this ocean-covered planet than meets the eye.