During Japan's feudal era, there was a war between two ninja clans: the Byakuro and the Kabusu. One night, the Kabusu staged a fierce attack on the Byakuro castle in hopes of kidnapping the clan's infant princess. Their mission was foiled when a loyal ninja of the Byakuro flees the attack with the princess and disappears, eventually raising her to be a ninja. Several years later, six ninja trainees are given a mission to infiltrate the Kabusu-occupied Byakuro castle and retrieve a sacred scroll to complete their training. But their skills are put to the test when they encounter three members of the Kabusu, who use dark sorcery in an attempt to once again capture the princess - who happens to be one of the trainees.

After a strategic maneuver, Senkuu Ishigami's team stalls Dr. Xeno's more scientifically advanced forces. A ceasefire between the two factions allows for the establishment of Corn City in North America, a hope for a future thriving population. Meanwhile, Senkuu and some of his teammates rush toward the Amazon in South America—the epicenter of the petrification beam's impact—to create Superalloy City and progress their spaceship project. With dangerous enemies still pursuing Senkuu and his companions, it is a race against time to reach the heart of the dense Amazon. As unexpected allies and scientific creations further fuel this leg of their journey, Senkuu is closer than ever to finally uncovering the mystery behind the petrification phenomenon.

While the mission to exorcise Jin "Jiji" Enjouji's family home is underway, things are not going as expected. Momo Ayase narrowly evades an attempted abduction while Ken "Okarun" Takakura and Jiji are ambushed by the Kitou family—the unsettling landlords of the cursed estate. The trio's efforts threaten the foundation of this enigmatic town shrouded in legends and mysteries. As Momo, Okarun, and Jiji are drawn deeper into the maze of folklore and supernatural entities, they must each utilize their unique powers if they want to survive and unravel the secrets of the uncanny town.

The legendary former hitman Tarou Sakamoto has thwarted numerous assassins after an enormous bounty on his head was issued. But he cannot seem to catch a break and simply take it easy with his beloved family. A mysterious and infamous figure known as Slur has brought a group of insane death row inmates to Japan, who hold back from nothing to eliminate their targets. Sakamoto is not the only target—the criminals have been assigned to kill various other people, including the new hires at Sakamoto's convenience store, Shin Asakura and Lu Shaotang. The situation escalates even further when the Order, a group of the most skilled Japanese assassins, becomes involved. As the inmates begin wreaking havoc, Sakamoto and his allies must remain vigilant for the sake of everything they hold dear.