In Kyoto, apprentices known as maiko are skilled performers of traditional dance and song. It is said their elegance and grace leaves any audience entranced. Mai Ichinose, Riko Kikuzuki, and Midori Aikawa are young girls who aspire to become maiko. They reside together in a geisha house to polish and perfect their skills, developing bonds of trust and supporting each other. However, their shared dream may prove disastrous for their friendship... When they learn about an upcoming festival, they cannot help but get excited. But soon they realize only two maiko can represent each house. It is then that the three close friends become distant, seeking to prove who is most deserving of the role. Ultimately, they must choose between fulfilling their own dream—finally within reach—or keeping their treasured friendship alive.

The sequel will focus on the islands west of the city.

Aoi was raised as a normal boy on Earth. Little did he know he was the heir apparent to Mito, the Queen-turned-Space-Pirate of an alien race that chooses their sex at puberty! Aoi fell in love with Mutsuki, the police officer who was chasing Mito, and the three of them saved the Universe. The only side effect was that Aoi blossomed into a beautiful young woman.

Now a malevolent entity calling herself the true Queen of the Universe appears with enough power to destroy entire planets. Aoi must defend her new throne, but she needs Mutsuki's help. Mutsuki must come to terms with her own feelings for Aoi so they can defend Earth together and become the galaxy's first royal pair of queens.

This sequel to the Silent Mobius The Movie 1 continues the timeline of the flashback section of the first movie (Katsumis initial contact with AMP), using some more ideas and persons from the Manga, and being slightly less incompatible to the Silent Mobius series from 1998.