D.S.O. agent Leon S. Kennedy is on a mission to rescue Dr. Antonio Taylor from kidnappers, when a mysterious woman thwarts his pursuit. Meanwhile, B.S.A.A. agent Chris Redfield is investigating a zombie outbreak in San Francisco, where the cause of the infection cannot be identified. The only thing the victims have in common is that they all visited Alcatraz Island recently. Following that clue, Chris and his team head to the island, where a new horror awaits them.

The movie will focus on Ai Haibara's past and will reconstruct the Mystery Train arc from the television anime, which shows Haibara and Conan meeting for the first time. The movie will also include scenes from the Kurogane no Submarine (Black Iron Submarine) movie.

Movie adaptation of Tsurune: Kazemai Koukou Kyuudoubu.